Biokmod

A Mathematica toolbox for solving system of differential equations, fitting coefficients, convolution, and more, with application for modeling Linear and Nonlinear Biokinetic Systems. It includes the current ICRP biokinetic models. It can be applied in pharmacokinetic, internal dosimetry, bioassay evaluations, nuclear medicine and more. This toolbox consist of Mathematica packages and tutorials.

Last updated October 19, 2015 biology simulation ode History Delete Edit Link

CplexA

“CplexA” is a Mathematica package to compute the probabilities and average properties of macromolecular assembly and its effects in gene regulation.

Last updated October 19, 2015 biology History Delete Edit Link

MathDAMP

A Mathematica package for differential analysis of metabolite profiles. MathDAMP facilitates the visualization of differences between metabolite profiles acquired by hyphenated mass spectrometry techniques. Differences are highlighted by applying arithmetic operations to all corresponding signal intensities from whole raw (automatically preprocessed and normalized) datasets on a datapoint-by-datapoint basis. The results are visualized using density plots.

Last updated October 11, 2015 visualization biology spectroscopy History Delete Edit Link

MathIOmica

MathIOmica provides a framework for graphical, numerical and symbolic work for omics analyses. The code cross-platform, open source and includes full integrated documentation.

Last updated December 18, 2016 omics networks biology History Delete Edit Link

xCellerator

xCellerator is a Mathematica package designed to aide biological modeling via the automated conversion of chemical reactions into ODEs and their subsequent solution via numerical integration.

Last updated September 27, 2015 biology chemistry simulation History Delete Edit Link