Geostatistics Kitchen package for geostatistical modelling.
Mathematica code for joint inference of identities by descent along multiple chromosomes from population samples.
Many packages, some of them generating plots and visualizations, others related to statistics. Several of the packages are related to Monte Carlo methods.
MathematicaStan is an interface for Stan, which is a probabilistic language for Bayesian inference, with MCMC sampling, approximate Bayesian inference, with variational sampling, and penalized maximum likelihood methods with optimizations.
Mathematica package for Reconstructing Ancestry Blocks BIT by bit in mapping populations.
Mathematica code for Bayesian inference of local trees by the SMC.
Mathematica package for haplotype reconstruction in a full-sib tetraploid family.