Extreme-Value-Modeling

Fit extreme value models.

Last updated September 8, 2015 statistics History Delete Edit Link

GSK GeoPack

Geostatistics Kitchen package for geostatistical modelling.

JointIBD

Mathematica code for joint inference of identities by descent along multiple chromosomes from population samples.

Last updated November 30, 2016 MCMC statistics genetics History Delete Edit Link

Mark Fisher packages

Many packages, some of them generating plots and visualizations, others related to statistics. Several of the packages are related to Monte Carlo methods.

Last updated September 27, 2015 utilities statistics monte carlo History Delete Edit Link

MathematicaStan

MathematicaStan is an interface for Stan, which is a probabilistic language for Bayesian inference, with MCMC sampling, approximate Bayesian inference, with variational sampling, and penalized maximum likelihood methods with optimizations.

Last updated September 16, 2016 statistics bayesian inference MCMC History Delete Edit Link

RABBIT

Mathematica package for Reconstructing Ancestry Blocks BIT by bit in mapping populations.

Last updated November 30, 2016 statistics genetics History Delete Edit Link

SMARTree

Mathematica code for Bayesian inference of local trees by the SMC.

Last updated November 30, 2016 statistics bayesian inference History Delete Edit Link

TetraOrigin

Mathematica package for haplotype reconstruction in a full-sib tetraploid family.

Last updated November 30, 2016 statistics genetics History Delete Edit Link